Search for Arabidopsis miRNA Candidates
Target:      Result Limit
miRNA:      5' U present
     percent GC to
Precursor:          rice homologues
         nMFE kcal/mol/nt to
Target-miRNA:      MFE threshold kcal/mol

Overide above parameters Show All Results Results as RNADNA
Enter a ( examples ):

Extra Limits: Sequence queries
miRNA candidate and query overlap > 15 nt
Transcript queries
Overlapping target sites

If you use our data and/or software in your research, please cite this web resource, and our paper.
Computational Prediction of miRNAs in Arabidopsis thaliana.
Alex Adai, Cameron Johnson, Sizolwenkosi Mlotshwa, Sarah Archer-Evans, Varun Manocha, Vicki Vance, and Venkatesan Sundaresan.
Genome Research 15:78-91, 2005
Addendum - Identification of miR395 targets by findMiRNA.
Contact :- We would be very interested to know of any new miRNAs found using this resource. To provide suggestions and feedback please contact Venkatesan Sundaresan at [ sundar at ucdavis dot edu ].